Molecular Dynamics Downloads

• Logs
• PDB structures
• MDP Files
• Umbrella Sampling
• Installation Instructions

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computer_journal.odt
File Size:	1075 kb
File Type:	odt

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computer_journal_2.odt
File Size:	21 kb
File Type:	odt

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ssbna9_fixed4.pdb
File Size:	53 kb
File Type:	pdb

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13merdna_mutant.pdb
File Size:	42 kb
File Type:	pdb

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13mer9bnaandmutant.pdb
File Size:	151 kb
File Type:	pdb

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ssdna13mer.pdb
File Size:	42 kb
File Type:	pdb

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ssbna9_fixed4.acpype.zip
File Size:	505 kb
File Type:	zip

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ions.mdp
File Size:	0 kb
File Type:	mdp

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minim.mdp
File Size:	0 kb
File Type:	mdp

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npt.mdp
File Size:	2 kb
File Type:	mdp

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md_pull.mdp
File Size:	1 kb
File Type:	mdp

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npt_umbrella.mdp
File Size:	1 kb
File Type:	mdp

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md_umbrella.mdp
File Size:	1 kb
File Type:	mdp

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umbrella_sampling_outline.txt
File Size:	4 kb
File Type:	txt

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umbrella_sampling_outline_v2.txt
File Size:	6 kb
File Type:	txt

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oneclick_pt1.pl
File Size:	0 kb
File Type:	pl

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oneclick_pt2.sh
File Size:	1 kb
File Type:	sh

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Autodock Installation Instructions
File Size:	0 kb
File Type:	txt

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Important links

Gromacs​:
www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/index.html
http://www.gromacs.org/
​http://www.gromacs.org/Downloads

Acpype:
webapps.ccpn.ac.uk/acpype/
https://code.google.com/archive/p/acpype/​
http://svn.code.sf.net/p/ccpn/code/branches/stable/ccpn/python/acpype/

Ambertools:​
ambermd.org/#AmberTools
http://ambermd.org/ubuntu.html